Journal of Plant Biotechnology : eISSN 2384-1397 pISSN 1229-2818

Table. 1.

Table. 1.

The relative synonymous codon usage value of 59 codons encoding 18 amino acids in the coat protein gene of apple mosaic virus according to hosts

Codon aa Apple Pear Hazelnut All
UUU F 1.04* 1.05 1.11 1.07
UUC F 0.96 0.95 0.89 0.93
UUA L 1.29 2.03 1.13 1.48
UUG L 2.26 2.03 2.38 2.22
CUU L 0.74 0.44 0.62 0.60
CUC L 0.09 0.04 0.06 0.06
CUA L 0.51 0.75 0.62 0.63
CUG L 1.12 0.71 1.19 1.01
AUU I 1.00 1.01 0.89 0.97
AUC I 0.9 0.89 1.00 0.93
AUA I 1.1 1.09 1.11 1.10
GUU V 0.86 1.24 0.81 0.97
GUC V 1.1 0.63 1.06 0.93
GUA V 0.17 0.36 0.22 0.25
GUG V 1.87 1.77 1.92 1.85
UCU S 1.16 0.85 1.20 1.07
UCC S 1.51 1.25 1.63 1.46
UCA S 0.03 0.23 0.09 0.12
UCG S 0.11 0.45 0.00 0.19
AGU S 2.55 2.66 2.49 2.57
AGC S 0.64 0.57 0.60 0.60
CCU P 0.79 0.91 0.85 0.85
CCC P 0.45 0.32 0.46 0.41
CCA P 0.64 1.03 0.64 0.77
CCG P 2.13 1.74 2.05 1.97
ACU T 1.13 0.86 1.20 1.06
ACC T 0.46 0.52 0.46 0.48
ACA T 0.73 0.67 0.80 0.73
ACG T 1.69 1.95 1.54 1.73
GCU A 1.42 1.82 1.69 1.64
GCC A 1.26 1.27 1.16 1.23
GCA A 0.47 0.22 0.31 0.33
GCG A 0.84 0.69 0.84 0.79
UAU Y 0.77 0.37 0.73 0.62
UAC Y 1.23 1.63 1.27 1.38
CAU H 0.49 0.39 0.43 0.44
CAC H 1.51 1.61 1.57 1.56
CAA Q 1.48 1.89 1.52 1.63
CAG Q 0.52 0.11 0.48 0.37
AAU N 1.34 1.38 1.42 1.38
AAC N 0.66 0.63 0.58 0.62
AAA K 0.54 0.59 0.56 0.56
AAG K 1.46 1.41 1.44 1.44
GAU D 1.21 1.52 1.24 1.32
GAC D 0.79 0.48 0.76 0.68
GAA E 0.94 1.15 0.98 1.02
GAG E 1.06 0.85 1.02 0.98
UGU C 0.57 1.04 0.50 0.70
UGC C 1.43 0.96 1.50 1.30
CGU R 0.47 0.62 0.43 0.51
CGC R 0.28 0.62 0.38 0.43
CGA R 1.49 0.98 1.39 1.29
CGG R 0.01 0.00 0.00 0.00
AGA R 1.37 1.73 1.39 1.50
AGG R 2.37 2.04 2.41 2.27
GGU G 1.88 1.97 2.13 1.99
GGC G 0.79 0.54 0.84 0.72
GGA G 0.92 1.11 0.80 0.94
GGG G 0.41 0.37 0.23 0.34

*The most frequently used codons are shown in bold.

J Plant Biotechnol 2022;49:46-60 https://doi.org/10.5010/JPB.2022.49.1.046
© 2022 J Plant Biotechnol